The Relation between Approximation in Distribution and Shadowing in Molecular Dynamics.
P. F. Tupper.
SIAM Journal on Applications of Dynamical Systems, June 2009.
Weak Convergence in the Prokhorov Metric of Methods for Stochastic Differential Equations.

B. Charbonneau, Y. Svyrydov, P. F. Tupper.
IMA Journal of Numerical Analysis, February 2009.
Phase Field Crystals as a Coarse-Graining in Time of Molecular Dynamics.

P. F. Tupper, Martin Grant.
Europhysics Letters, 81 No. 4 (February 2008) 40007.
A Conjecture about Molecular Dynamics.
P. F. Tupper.
Mathematics and Computation, a Contemporary View: The Abel Symposium 2006. Chapter 5 November 2008.
Energy Drift in Molecular Dynamics Simulations.
D. Cottrell and P. F. Tupper.
BIT Numerical Mathematics. Volume 47, No 3, September 2007, 507-523.
Computing Statistics for Hamiltonian Systems: A Case Study.
P. F. Tupper.
Journal of Computational and Applied Mathematics, Volume 205, Issue 2, August 2007, 826-834.
Continuous and Tractable models for the Variation of Evolutionary Rates.
T. Lepage, S. Lawi, P. Tupper, D. Bryant
Mathematical Biosciences, Volume 199, Issue 2, February 2006, Pages 216-233.
Ergodicity and the Numerical Simulation of Hamiltonian Systems.
P. F. Tupper.
SIAM Journal on Applied Dynamical Systems, v. 4, 2005.
A Test Problem for Molecular Dynamics Integrators.
P. F. Tupper.
IMA Journal of Numerical Analysis, v. 25, 2005.
Adaptive Model Reduction for Chemical Kinetics.
P. F. Tupper.
BIT Numerical Mathematics, June 2002.

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Long Term Behaviour of Large Mechanical Systems with Random Initial Data.
R. Kupferman, A. M. Stuart, J. R. Terry, P. F. Tupper.
Stochastics and Dynamics, December 2002.
A Non-Existence Result for Hamiltonian Integrators.
P. F. Tupper. Unpublished. 2006.